Award Abstract # 1846376
CAREER: Tempo, Contingency, and Gene Flow in the Coevolution of a Model Microbial Mutualism

NSF Org: DEB
Division Of Environmental Biology
Recipient: THE UNIVERSITY OF MISSISSIPPI
Initial Amendment Date: February 19, 2019
Latest Amendment Date: June 28, 2023
Award Number: 1846376
Award Instrument: Continuing Grant
Program Manager: Samuel Scheiner
sscheine@nsf.gov
 (703)292-7175
DEB
 Division Of Environmental Biology
BIO
 Direct For Biological Sciences
Start Date: August 1, 2019
End Date: July 31, 2025 (Estimated)
Total Intended Award Amount: $953,429.00
Total Awarded Amount to Date: $953,429.00
Funds Obligated to Date: FY 2019 = $781,102.00
FY 2023 = $172,327.00
History of Investigator:
  • Erik Hom (Principal Investigator)
    erik@olemiss.edu
Recipient Sponsored Research Office: University of Mississippi
113 FALKNER
UNIVERSITY
MS  US  38677-9704
(662)915-7482
Sponsor Congressional District: 01
Primary Place of Performance: University of Mississippi
403 Shoemaker Hall
University
MS  US  38677-1848
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): G1THVER8BNL4
Parent UEI:
NSF Program(s): Evolutionary Processes
Primary Program Source: 01002324DB NSF RESEARCH & RELATED ACTIVIT
01001920DB NSF RESEARCH & RELATED ACTIVIT

01001920DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1045, 9150
Program Element Code(s): 112700
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Mutualisms - beneficial interactions between two organisms - are common in nature and have profoundly shaped life on our planet. Mutualistic microbes are important to human health because of the importance of microbes that live in and on our bodies. They impact human welfare, for example because of the role of microbes associated with high-yielding crop plants. These examples demonstrate the fundamental importance of microbial mutualisms to human flourishing. Surprisingly, very little is understood about how such mutualisms are born, or the conditions that are important in their formation. This project will investigate how mutualistic relationships form and become established at the genetic level. It will explore how environmental factors impact the evolution and stability of these new mutualisms. Insights from this work may be relevant for biodiversity conservation efforts and for the management of invasive species in light of environmental change. This project will also facilitate the growth and development of initiatives aimed at improving STEM education practices and STEM preparedness of graduate, undergraduate, high school, and community college transfer students, that build upon the Principal Investigator's existing efforts to improve the STEM success landscape in Mississippi.

The Principal Investigator created a new mutualism based on carbon and nitrogen exchange between two model microbes, the budding yeast Saccharomyces cerevisiae and the green alga Chlamydomonas reinhardtii, a system with an unprecedented degree of experimental and genetic tractability. Using this system, this project will elucidate how nascent mutualistic relationships are consolidated at the genetic level and investigate the impact of (1) carbon and nitrogen nutrient availability, (2) historical contingency (i.e., prior evolutionary history), and (3) gene flow/migration (between communities adapted to different local environmental conditions) on the coevolution of mutualism. This work will experimentally test ideas underlying Thompson's Geographic Mosaic Theory of Coevolution, and address several questions, including: (i) how do environmental conditions and/or the degree of interspecies dependency (obligate or facultative) influence coevolutionary trajectories and the distribution of adaptive genetic changes among partners? (ii) To what degree does prior mutualistic evolutionary history canalize or limit the possibilities for subsequent evolutionary adaptation? (iii) How does genetic mixing of partners that have evolved under different sets of conditions influence subsequent coevolutionary outcomes compared to cases where there is no gene flow? An integral part of this project includes efforts to: (1) enhance undergraduate and graduate education in evolution and genomics, (2) improve academic preparedness and success of community college transfer students, and (3) catalyze STEM interest and college readiness among low-income high school students, notably from the Mississippi Delta.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Jurburg, Stephanie D. and Hom, Erik F. and Chatzinotas, Antonis "Beyond pathogenesis: Detecting the full spectrum of ecological interactions in the virosphere" PLOS Biology , v.21 , 2023 https://doi.org/10.1371/journal.pbio.3002109 Citation Details
Jurburg, Stephanie D. and Buscot, François and Chatzinotas, Antonis and Chaudhari, Narendrakumar M. and Clark, Adam T. and Garbowski, Magda and Grenié, Matthias and Hom, Erik F. and Karakoç, Canan and Marr, Susanne and Neumann, Steffen and Tarkka, Mika an "The community ecology perspective of omics data" Microbiome , v.10 , 2022 https://doi.org/10.1186/s40168-022-01423-8 Citation Details
Kaup, Maya and Trull, Sam and Hom, Erik F. Y. "On the move: sloths and their epibionts as model mobile ecosystems" Biological Reviews , v.96 , 2021 https://doi.org/10.1111/brv.12773 Citation Details
Venkataram, Sandeep and Kuo, Huan-Yu and Hom, Erik F. and Kryazhimskiy, Sergey "Early adaptation in a microbial community is dominated by mutualism-enhancing mutations" bioRxiv , 2021 https://doi.org/10.1101/2021.07.07.451547 Citation Details
Hom, Erik F. Y. and Penn, Alexandra S. "Symbiosis and the Anthropocene" Symbiosis , v.84 , 2021 https://doi.org/10.1007/s13199-021-00794-0 Citation Details
Nazem-Bokaee, Hadi and Hom, Erik F. and Warden, Andrew C. and Mathews, Sarah and Gueidan, Cécile "Towards a Systems Biology Approach to Understanding the Lichen Symbiosis: Opportunities and Challenges of Implementing Network Modelling" Frontiers in Microbiology , v.12 , 2021 https://doi.org/10.3389/fmicb.2021.667864 Citation Details
Venkataram, Sandeep and Kuo, Huan-Yu and Hom, Erik F. and Kryazhimskiy, Sergey "Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community" Nature Ecology & Evolution , v.7 , 2023 https://doi.org/10.1038/s41559-022-01923-8 Citation Details

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